loadTxdbTranscripts: Load transcripts, CDS, and a txdb object for a user-specified...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/rearlist-utils.R
loadTxdbTranscripts R Documentation
Load transcripts, CDS, and a txdb object for a user-specified build
Description
Load transcripts, CDS, and a txdb object for a user-specified build
Usage
loadTxdbTranscripts(build, seq_levels)
Arguments
build
character string providing genome build. Currently only hg19 and hg18 are supported.
seq_levels
allowed seqnames
Value
a named list with elements 'transcripts' (GRanges of transcripts), 'cds' (GRangesList of CDS listed by transcript), and 'txdb' (a txdb object).
Examples
tx.cds <- loadTxdbTranscripts("hg19")
tx.cds[["cds"]]
tx.cds[["transcripts"]]
tx.cds[["txdb"]]
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/rearlist-utils.R
| loadTxdbTranscripts | R Documentation |
Load transcripts, CDS, and a txdb object for a user-specified build
Description
Load transcripts, CDS, and a txdb object for a user-specified build
Usage
loadTxdbTranscripts(build, seq_levels)
Arguments
build |
character string providing genome build. Currently only hg19 and hg18 are supported. |
seq_levels |
allowed seqnames |
Value
a named list with elements 'transcripts' (GRanges of transcripts), 'cds' (GRangesList of CDS listed by transcript), and 'txdb' (a txdb object).
Examples
tx.cds <- loadTxdbTranscripts("hg19")
tx.cds[["cds"]]
tx.cds[["transcripts"]]
tx.cds[["txdb"]]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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