loadTxdbTranscripts: Load transcripts, CDS, and a txdb object for a user-specified...

View source: R/rearlist-utils.R

loadTxdbTranscriptsR Documentation

Load transcripts, CDS, and a txdb object for a user-specified build

Description

Load transcripts, CDS, and a txdb object for a user-specified build

Usage

loadTxdbTranscripts(build, seq_levels)

Arguments

build

character string providing genome build. Currently only hg19 and hg18 are supported.

seq_levels

allowed seqnames

Value

a named list with elements 'transcripts' (GRanges of transcripts), 'cds' (GRangesList of CDS listed by transcript), and 'txdb' (a txdb object).

Examples

tx.cds <- loadTxdbTranscripts("hg19")
tx.cds[["cds"]]
tx.cds[["transcripts"]]
tx.cds[["txdb"]]

cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.