modalRearrangement: Accessor for the modal rearrangement of a linked tag cluster

In cancer-genomics/trellis: Somatic structural variant analysis

Accessor for the modal rearrangement of a linked tag cluster

Description

For a two clusters of improper reads that are linked by the pairing information, we classify the type of rearrangement supported by each improper read pair. Once each read pair is typed, we store the modal type in the Rearrangement object.

Usage

modalRearrangement(object)

modalRearrangement(object) <- value

## S4 method for signature 'Rearrangement'
modalRearrangement(object)

## S4 replacement method for signature 'Rearrangement'
modalRearrangement(object) <- value

## S4 method for signature 'RearrangementList'
modalRearrangement(object)

Arguments

object	a Rearrangement object
value	a character-string indicating the modal rearrangement type

Value

a character string

cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.