organizeReads: Organize improper read pairs supporting a rearrangement into...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/rearlist-utils.R
organizeReads R Documentation
Organize improper read pairs supporting a rearrangement into a data.frame
Description
Facilitates plotting reads supporting a rearrangement with ggplot.
Usage
organizeReads(rlist, split_reads)
Arguments
rlist
a 'RearrangementList'
split_reads
a data.frame of split reads from BLAT. See 'rearrangedReads'.
See Also
rearrangedReads
cancer-genomics/trellis documentation built on June 8, 2024, 6:01 a.m.
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View source: R/rearlist-utils.R
| organizeReads | R Documentation |
Organize improper read pairs supporting a rearrangement into a data.frame
Description
Facilitates plotting reads supporting a rearrangement with ggplot.
Usage
organizeReads(rlist, split_reads)
Arguments
rlist |
a 'RearrangementList' |
split_reads |
a data.frame of split reads from BLAT. See 'rearrangedReads'. |
See Also
rearrangedReads
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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