properReadPairs: Import properly paired reads from a bam file
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/alignment-utils.R
properReadPairs R Documentation
Import properly paired reads from a bam file
Description
Import properly paired reads from a bam file
Usage
properReadPairs(bam_path, gr, param = DeletionParam())
Arguments
bam_path
character string providing complete path to bam file
gr
a GRanges object
param
a DeletionParam object
Value
a GAlignmentPairs object
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/alignment-utils.R
| properReadPairs | R Documentation |
Import properly paired reads from a bam file
Description
Import properly paired reads from a bam file
Usage
properReadPairs(bam_path, gr, param = DeletionParam())
Arguments
bam_path |
character string providing complete path to bam file |
gr |
a |
param |
a |
Value
a GAlignmentPairs object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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