rFilters: Construct list of filters for somatic rearrangement analyses

In cancer-genomics/trellis: Somatic structural variant analysis

Construct list of filters for somatic rearrangement analyses

Description

Construct list of filters for somatic rearrangement analyses

Usage

rFilters(
  germline = GRanges(),
  rear = GRanges(),
  deletions = GRanges(),
  amplicons = GRanges()
)

Arguments

germline	a GRanges object of germline filters
rear	a GRanges object of rearrangements identified in germline samples (e.g., possibly artifactual)
deletions	a GRanges object of deletions
amplicons	a GRanges object of amplicons

Value

a GRangesList of rearrangement filter

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.