readBlat: Read output from the command-line blat
In cancer-genomics/trellis: Somatic structural variant analysis
readBlat R Documentation
Read output from the command-line blat
Description
The command-line version of blat can be downloaded from sourceforge:
http://sourceforge.net/projects/blat/files/
Usage
readBlat(filename, skip = 5, col_names = FALSE, ...)
Arguments
filename
character string providing full path to blat output
...
additional arguments to read_tsv
Value
a data.frame of alignment records from blat
See Also
See blatScores for evaluating whether the
blat alignments support a novel sequence junction
cancer-genomics/trellis documentation built on June 8, 2024, 6:01 a.m.
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| readBlat | R Documentation |
Read output from the command-line blat
Description
The command-line version of blat can be downloaded from sourceforge: http://sourceforge.net/projects/blat/files/
Usage
readBlat(filename, skip = 5, col_names = FALSE, ...)
Arguments
filename |
character string providing full path to blat output |
... |
additional arguments to |
Value
a data.frame of alignment records from blat
See Also
See blatScores for evaluating whether the
blat alignments support a novel sequence junction
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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