readPairsNearVariant: Extract all mapped read pairs near a deletion(s)
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/alignment-utils.R
readPairsNearVariant R Documentation
Extract all mapped read pairs near a deletion(s)
Description
Wrapper for readGAlignments that extracts mapped read pairs
near deletions.
Usage
readPairsNearVariant(object, bam.file)
Arguments
object
a GRanges object
bam.file
a character string providing complete path to bam file
Value
a GAlignmentPairs object
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/alignment-utils.R
| readPairsNearVariant | R Documentation |
Extract all mapped read pairs near a deletion(s)
Description
Wrapper for readGAlignments that extracts mapped read pairs
near deletions.
Usage
readPairsNearVariant(object, bam.file)
Arguments
object |
a |
bam.file |
a character string providing complete path to bam file |
Value
a GAlignmentPairs object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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