rearrangementData: Creates a list object of data required to identify...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/rearlist-utils.R
rearrangementData R Documentation
Creates a list object of data required to identify rearrangements
Description
Creates a list object of data required to identify rearrangements
Usage
rearrangementData(
bins = GRanges(),
read_pairs,
rlist = RearrangementList(),
filters = rFilters()
)
Arguments
bins
a GRanges object of non-overlapping (typically 1kb) bins
read_pairs
a GAlignmentPairs-representation of paired reads
rlist
a RearrangementList
filters
a GRangesList of sequence- and germline-based filters
Value
a list
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/rearlist-utils.R
| rearrangementData | R Documentation |
Creates a list object of data required to identify rearrangements
Description
Creates a list object of data required to identify rearrangements
Usage
rearrangementData( bins = GRanges(), read_pairs, rlist = RearrangementList(), filters = rFilters() )
Arguments
bins |
a |
read_pairs |
a |
rlist |
a |
filters |
a |
Value
a list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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