recurrentDrivers: Table of recurrent drivers
In cancer-genomics/trellis: Somatic structural variant analysis

recurrentDrivers

R Documentation

Table of recurrent drivers

Given a GRangesList of amplicons or deletions (each element of list is a sample), tabulate the frequency of driver deletions or amplifications.

recurrentDrivers(grl, transcripts, split = ", ")

`grl`	a `GRangesList` organized by sample
`transcripts`	a `GRanges` object of transcripts as provided by the `svfilters.<ucsc_build>` packages
`split`	A character string indicating the string used to separate drivers. By default, we assume the drivers associated with a given deletion or amplicon are separated by a comma followed by a space.