referenceProtein: Translate the unrearranged (reference) sequence
In cancer-genomics/trellis: Somatic structural variant analysis
referenceProtein R Documentation
Translate the unrearranged (reference) sequence
Description
Translate the unrearranged (reference) sequence
Usage
referenceProtein(genome, cds, nms)
Arguments
genome
a BSgenome object
cds
a GRangesList of transcript CDS
nms
names of transcripts to translate
See Also
tumorProtein
Examples
library(BSgenome.Hsapiens.UCSC.hg19)
genome <- BSgenome.Hsapiens.UCSC.hg19
data(rear_cds, package="trellis")
unrear_cds <- fullTranscripts(rear_cds)
##
## referenceProtein
##
ref.proteins <- referenceProtein(genome, unrear_cds, names(unrear_cds))
cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.
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| referenceProtein | R Documentation |
Translate the unrearranged (reference) sequence
Description
Translate the unrearranged (reference) sequence
Usage
referenceProtein(genome, cds, nms)
Arguments
genome |
a |
cds |
a |
nms |
names of transcripts to translate |
See Also
tumorProtein
Examples
library(BSgenome.Hsapiens.UCSC.hg19)
genome <- BSgenome.Hsapiens.UCSC.hg19
data(rear_cds, package="trellis")
unrear_cds <- fullTranscripts(rear_cds)
##
## referenceProtein
##
ref.proteins <- referenceProtein(genome, unrear_cds, names(unrear_cds))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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