rpSupportedDeletions: Counts the number of improper read pairs supporting a...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/deletion-utils.R
rpSupportedDeletions R Documentation
Counts the number of improper read pairs supporting a deletion
Description
If the number of improper read pairs supporting a deletion exceeds
minFlankingHemizgyous(param), a deletion is designated as
"hemizygous+" if hemizygous and "homozygous+" if homozygous.
Usage
rpSupportedDeletions(sv, param, bins)
Arguments
sv
a StructuralVariant object
param
a DeletionParam object
bins
a GRanges object containing the bins used in preprocessing
with mcols value 'log_ratio'
Value
a character-vector of deletion calls
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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View source: R/deletion-utils.R
| rpSupportedDeletions | R Documentation |
Counts the number of improper read pairs supporting a deletion
Description
If the number of improper read pairs supporting a deletion exceeds
minFlankingHemizgyous(param), a deletion is designated as
"hemizygous+" if hemizygous and "homozygous+" if homozygous.
Usage
rpSupportedDeletions(sv, param, bins)
Arguments
sv |
a |
param |
a |
bins |
a |
Value
a character-vector of deletion calls
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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