tags-methods: Accessor for all the improper reads

In cancer-genomics/trellis: Somatic structural variant analysis

Accessor for all the improper reads

Description

Accessor for improper reads belonging to one of the linked bins. While a given read can only belong to one cluster (the clusters are non-overlapping), a single cluster can be linked to several other clusters. Consequently, a single read (ignoring its mate) can belong to several linked clusters. For visualizing the reads supporting a rearrangement, it may also be important to carry forward tags that do not support the rearrangement.

Usage

tags(object)

tags(object) <- value

## S4 method for signature 'Rearrangement'
tags(object)

## S4 replacement method for signature 'Rearrangement'
tags(object) <- value

Arguments

object	a Rearrangement object
value	a GRanges object of read alignments

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.