thinReadPairs: Extract read pairs from a 'StructuralVariant' object
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/deletion-utils.R
thinReadPairs R Documentation
Extract read pairs from a StructuralVariant object
Description
This function extracts all read pairs from a StructuralVariant object and
then performs a filtering step. The filtering step thins the number of read
pairs with insert size less than 3kb.
Usage
thinReadPairs(object, max.out = 25000)
Arguments
object
a StructuralVariant object
max.out
length-one integer vector: the maximum number of read pairs to return
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/deletion-utils.R
| thinReadPairs | R Documentation |
Extract read pairs from a StructuralVariant object
Description
This function extracts all read pairs from a StructuralVariant object and then performs a filtering step. The filtering step thins the number of read pairs with insert size less than 3kb.
Usage
thinReadPairs(object, max.out = 25000)
Arguments
object |
a |
max.out |
length-one integer vector: the maximum number of read pairs to return |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.