tumorProtein: Translate the sequence of a rearranged DNA sequence
In cancer-genomics/trellis: Somatic structural variant analysis
tumorProtein R Documentation
Translate the sequence of a rearranged DNA sequence
Description
Translate the sequence of a rearranged DNA sequence
Usage
tumorProtein(genome, fused.txlist)
Arguments
genome
a BSgenome object
fused.txlist
a GRangesList
See Also
referenceProtein
Examples
data(rear_cds, package="trellis")
library(BSgenome.Hsapiens.UCSC.hg19)
genome <- BSgenome.Hsapiens.UCSC.hg19
fused_tx <- fuse(clip(rear_cds))
fused.proteins <- tumorProtein(genome, fused_tx)
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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| tumorProtein | R Documentation |
Translate the sequence of a rearranged DNA sequence
Description
Translate the sequence of a rearranged DNA sequence
Usage
tumorProtein(genome, fused.txlist)
Arguments
genome |
a |
fused.txlist |
a |
See Also
referenceProtein
Examples
data(rear_cds, package="trellis") library(BSgenome.Hsapiens.UCSC.hg19) genome <- BSgenome.Hsapiens.UCSC.hg19 fused_tx <- fuse(clip(rear_cds)) fused.proteins <- tumorProtein(genome, fused_tx)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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