validFusions: Create a List of in-frame fusions with no premature stops
In cancer-genomics/trellis: Somatic structural variant analysis
validFusions R Documentation
Create a List of in-frame fusions with no premature stops
Description
Create a List of in-frame fusions with no premature stops
Usage
validFusions(fusion.list, cds.list, inframe.nostop, ref.frames)
Arguments
fusion.list
a List created by partitionAASequence
cds.list
a List created by fuseCDS_Rlist
inframe.nostop
a List of LogicalLists. True values indicate fusions that are both in-frame and have no premature stop codons.
ref.frames
list of amino acid squences for reference proteins, organized by frame
See Also
partitionAASequence fuseCDS_Rlist
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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| validFusions | R Documentation |
Create a List of in-frame fusions with no premature stops
Description
Create a List of in-frame fusions with no premature stops
Usage
validFusions(fusion.list, cds.list, inframe.nostop, ref.frames)
Arguments
fusion.list |
a |
cds.list |
a |
inframe.nostop |
a |
ref.frames |
list of amino acid squences for reference proteins, organized by frame |
See Also
partitionAASequence fuseCDS_Rlist
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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