validFusions: Create a List of in-frame fusions with no premature stops

In cancer-genomics/trellis: Somatic structural variant analysis

Create a List of in-frame fusions with no premature stops

Description

Create a List of in-frame fusions with no premature stops

Usage

validFusions(fusion.list, cds.list, inframe.nostop, ref.frames)

Arguments

fusion.list	a List created by partitionAASequence
cds.list	a List created by fuseCDS_Rlist
inframe.nostop	a List of LogicalLists. True values indicate fusions that are both in-frame and have no premature stop codons.
ref.frames	list of amino acid squences for reference proteins, organized by frame

See Also

partitionAASequence fuseCDS_Rlist

cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.