MafftOrientAlign: Align BUSCO Orthologs

In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools

Align BUSCO Orthologs

Description

This function allows you align each ortholog between all species

Usage

MafftOrientAlign(extract_dir, mafft_dir, threads = 1, omit_invariants = T)

Arguments

extract_dir	Directory containing unaligned/unorientated fasta files
mafft_dir	Directory to write orientated and aligned fasta files
threads	Number of cpu threads to use
omit_invariants	T/F toggle

Author(s)

Dustin J Wcisel, [e-mail]

James Thomas Howard, [e-mail]

Jeffrey A Yoder, [e-mail]

Alex Dornburg, [e-mail]

Examples

MafftOrientAlign(extract_dir = "path/to/extracted/", mafft_dir = "/path/to/mafft/", threads = 1)

carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.