ParseScores: Get Busco scores from summary file
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
ParseScores R Documentation
Get Busco scores from summary file
Description
Fetch transcriptome completeness assessment from BUSCO output
Usage
result_df <- parse_busco_output(file_path, input_id)
Arguments
file_path
The path to the output short summary from busco “parsed_busco_results.tsv”
input_id
A usr defined name for the sample in case you want to plot this with a phylogeny or track with multiple samples. Examples include "Genus_species", "Accession", "strain", etc
Value
Returns the busco scores in a dataframe along with the sample ID
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
result_df <- parse_busco_output(file_path, input_id)
carolinafishes/toast documentation built on Dec. 23, 2024, 8:50 p.m.
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| ParseScores | R Documentation |
Get Busco scores from summary file
Description
Fetch transcriptome completeness assessment from BUSCO output
Usage
result_df <- parse_busco_output(file_path, input_id)
Arguments
file_path |
The path to the output short summary from busco “parsed_busco_results.tsv” |
input_id |
A usr defined name for the sample in case you want to plot this with a phylogeny or track with multiple samples. Examples include "Genus_species", "Accession", "strain", etc |
Value
Returns the busco scores in a dataframe along with the sample ID
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
result_df <- parse_busco_output(file_path, input_id)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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