PhyIntoNex: Utility for turning TOAST superalign.txt into Nexus file
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
PhyIntoNex R Documentation
Utility for turning TOAST superalign.txt into Nexus file
Description
Utility for turning TOAST superalign.txt into Nexus file
Usage
PhyIntoNex(filename = "superalign.txt")
Arguments
filename
defaults to superalign.txt assuming it is in the working directory. A full path can be specified
Value
exports an alignment in classic phyllip format into a nexus file.
This is designed for the superalign file generated by toast,
but will work on any alignment file formatted the same way.
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
PhyIntoNex(filename = "superalign.txt")
carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.
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| PhyIntoNex | R Documentation |
Utility for turning TOAST superalign.txt into Nexus file
Description
Utility for turning TOAST superalign.txt into Nexus file
Usage
PhyIntoNex(filename = "superalign.txt")
Arguments
filename |
defaults to superalign.txt assuming it is in the working directory. A full path can be specified |
Value
exports an alignment in classic phyllip format into a nexus file. This is designed for the superalign file generated by toast, but will work on any alignment file formatted the same way.
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
PhyIntoNex(filename = "superalign.txt")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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