PartitionTable: Utility for Creating a Partition Table from Fasta Alignments
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
View source: R/PartitionTable.R
PartitionTable R Documentation
Utility for Creating a Partition Table from Fasta Alignments
Description
Parse through a directory of FASTA files and writes "table.partition" to working directory
Usage
PartitionTable(aligned_dir, missing_df, filename)
Arguments
aligned_dir
Directory where fasta alignments can be found
missing_df
Missing data object made by the missing function
filename
String for what you want to name your file
Value
Reads through the full table found in folders ./busco_results/run_Busco* and
returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
PartitionTable(aligned_dir, missing, filename="table.partition")
carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.
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View source: R/PartitionTable.R
| PartitionTable | R Documentation |
Utility for Creating a Partition Table from Fasta Alignments
Description
Parse through a directory of FASTA files and writes "table.partition" to working directory
Usage
PartitionTable(aligned_dir, missing_df, filename)
Arguments
aligned_dir |
Directory where fasta alignments can be found |
missing_df |
Missing data object made by the missing function |
filename |
String for what you want to name your file |
Value
Reads through the full table found in folders ./busco_results/run_Busco* and returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
PartitionTable(aligned_dir, missing, filename="table.partition")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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