PhyIntoFasta: Utility for turning phylip file into fasta file

In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools

Utility for turning phylip file into fasta file

Description

Utility for turning phylip file into fasta file

Usage

PhyIntoFasta(
  phylipfile = "myphylipdata",
  filename = "file_name",
  externalfile = TRUE
)

Arguments

phylipfile	defaults to myphylipdata
filename	defaults to file_name
externalfile	defaults to TRUE

Value

This function uses an aligned phylip file that is either in your working directory externalfile=TRUE or that has been read into memory, externalfile=false. This then converts it to a fasta format writing to file with user specified filename

Author(s)

Alex Dornburg, [e-mail]

Examples

PhyIntoFasta(fastafile= myphylipdata, filename="file_name",externalfile=TRUE)

carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.