SuperAlign: Utility for Creating a concatenated alignment from Fasta...
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
SuperAlign R Documentation
Utility for Creating a concatenated alignment from Fasta Alignments
Description
Parse through a directory of FASTA files to combine into one alignment
Usage
SuperAlign(aligned_dir, missing_df)
Arguments
aligned_dir
Directory where fasta alignments can be found
missing_df
Missing data object made by the missing function
filename
String for what you want to name your output, default is "superalign.phy"
Value
Reads through the full table found in folders ./busco_results/run_Busco* and
returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
partition_df <- SuperAlign(aligned_dir, missing_df, filename="myalignment.phy")
carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.
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| SuperAlign | R Documentation |
Utility for Creating a concatenated alignment from Fasta Alignments
Description
Parse through a directory of FASTA files to combine into one alignment
Usage
SuperAlign(aligned_dir, missing_df)
Arguments
aligned_dir |
Directory where fasta alignments can be found |
missing_df |
Missing data object made by the missing function |
filename |
String for what you want to name your output, default is "superalign.phy" |
Value
Reads through the full table found in folders ./busco_results/run_Busco* and returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
partition_df <- SuperAlign(aligned_dir, missing_df, filename="myalignment.phy")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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