NexIntoFas: Utility for turning TOAST superalign.txt into Nexus file

In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools

Utility for turning TOAST superalign.txt into Nexus file

Description

Utility for turning a nexus file into fasta file in TOAST

Usage

NexIntoFas(nexusfile= myphylipdata, filename="file_name",externalfile=TRUE)

Arguments

filename

defaults to superalign.txt assuming it is in the working directory. A full path can be specified

Value

This function uses an aligned phylip file that is either in your working directory externalfile=TRUE or that has been read into memory, externalfile=false. This then converts it to a fasta format writing to file with user specified filename

Author(s)

Alex Dornburg, [e-mail]

Examples

NexIntoFas(nexusfile= myphylipdata, filename="file_name",externalfile=TRUE)

carolinafishes/toast documentation built on Dec. 23, 2024, 8:50 p.m.