compile_busco_summaries: Get Busco scores from a series of summary files
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
View source: R/compile_busco_summaries.R
compile_busco_summaries R Documentation
Get Busco scores from a series of summary files
Description
Fetch transcriptome completeness assessment from BUSCO outputs
Usage
result_df <- compile_busco_summaries(folderpath)
Arguments
folderpath
The path to a root directory that contains directories that each represent the outputs from a busco run. Note that the name of each directory will be used as a sample ID
Value
Returns the busco scores in a dataframe along with the sample ID determined by the directory name
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
all_summaries <- compile_busco_summaries(folder_path)
carolinafishes/toast documentation built on Dec. 23, 2024, 8:50 p.m.
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View source: R/compile_busco_summaries.R
| compile_busco_summaries | R Documentation |
Get Busco scores from a series of summary files
Description
Fetch transcriptome completeness assessment from BUSCO outputs
Usage
result_df <- compile_busco_summaries(folderpath)
Arguments
folderpath |
The path to a root directory that contains directories that each represent the outputs from a busco run. Note that the name of each directory will be used as a sample ID |
Value
Returns the busco scores in a dataframe along with the sample ID determined by the directory name
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
all_summaries <- compile_busco_summaries(folder_path)R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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