VisualizeThreshold: Determine and Appropriate Missing Data Threshold
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
View source: R/VisualizeThreshold.R
VisualizeThreshold R Documentation
Determine and Appropriate Missing Data Threshold
Description
Graphically assess the impact of a missing data threshold on changes in the distribution of missing data
Usage
VisualizeThreshold(tsv, threshold)
Arguments
tsv
a data frame of missing data coverage such as the generated “parsed_busco_results.tsv”
threshold
cutoff value for minimum number of sequences allowed per taxon
Value
Returns graphic of missing data based on defined threshold
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
VisualizeThreshold("parsed_busco_results.tsv", 1000)
carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.
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View source: R/VisualizeThreshold.R
| VisualizeThreshold | R Documentation |
Determine and Appropriate Missing Data Threshold
Description
Graphically assess the impact of a missing data threshold on changes in the distribution of missing data
Usage
VisualizeThreshold(tsv, threshold)
Arguments
tsv |
a data frame of missing data coverage such as the generated “parsed_busco_results.tsv” |
threshold |
cutoff value for minimum number of sequences allowed per taxon |
Value
Returns graphic of missing data based on defined threshold
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
VisualizeThreshold("parsed_busco_results.tsv", 1000)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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