VisualizeThreshold: Determine and Appropriate Missing Data Threshold

View source: R/VisualizeThreshold.R

VisualizeThresholdR Documentation

Determine and Appropriate Missing Data Threshold

Description

Graphically assess the impact of a missing data threshold on changes in the distribution of missing data

Usage

VisualizeThreshold(tsv, threshold)

Arguments

tsv

a data frame of missing data coverage such as the generated “parsed_busco_results.tsv”

threshold

cutoff value for minimum number of sequences allowed per taxon

Value

Returns graphic of missing data based on defined threshold

Author(s)

Dustin J Wcisel, djwcisel@ncsu.edu

James Thomas Howard, jthowar3@ncsu.edu

Jeffrey A Yoder, jayoder@ncsu.edu

Alex Dornburg, dornburgalex@gmail.com

Examples

VisualizeThreshold("parsed_busco_results.tsv", 1000)

carolinafishes/toast documentation built on June 28, 2023, 8:10 p.m.