MissingDataTable: Utility for Assessing Missing Data in a Set of FASTA Files
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
View source: R/MissingDataTable.R
MissingDataTable R Documentation
Utility for Assessing Missing Data in a Set of FASTA Files
Description
Parse through a directory of FASTA files to assess missing data patterns between taxa and loci
Usage
MissingDataTable(aligned_dir)
Arguments
aligned_dir
Directory where fasta alignments can be found
Value
Reads through the full table found in folders ./busco_results/run_Busco* and
returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
missing_data_df <- MissingDataTable(aligned_dir)
carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.
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View source: R/MissingDataTable.R
| MissingDataTable | R Documentation |
Utility for Assessing Missing Data in a Set of FASTA Files
Description
Parse through a directory of FASTA files to assess missing data patterns between taxa and loci
Usage
MissingDataTable(aligned_dir)
Arguments
aligned_dir |
Directory where fasta alignments can be found |
Value
Reads through the full table found in folders ./busco_results/run_Busco* and returns a dataframe of the results
Author(s)
Dustin J Wcisel, djwcisel@ncsu.edu
James Thomas Howard, jthowar3@ncsu.edu
Jeffrey A Yoder, jayoder@ncsu.edu
Alex Dornburg, dornburgalex@gmail.com
Examples
missing_data_df <- MissingDataTable(aligned_dir)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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