PlotBuscoSummaries: plot Busco scores from the compile_busco_summaries output
In carolinafishes/toast: Transcriptome Ortholog Alignment Sequence Tools
View source: R/PlotBuscoSummaries.R
PlotBuscoSummaries R Documentation
plot Busco scores from the compile_busco_summaries output
Description
Graph transcriptome completeness assessment from BUSCO outputs
Usage
result_df <- compile_busco_summaries(folderpath)
PlotBuscoSummaries(result_df)
Arguments
result_df
The output from the compile busco summaries function or dataframe in identical format
CSC
Color choice for "Complete_Single_Copy" = CSC, # Default=Light Blue
CDC
Color choice for CDC "Complete_Duplicated" = CDC, # Default=Steel Blue
Frag
Color choice for Frag "Fragmented" = Frag, # Default=Medium Purple
Miss
Color choice for Miss "Missing" = Miss # Default=Peach Puff
Value
Returns a plot
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
all_summaries <- compile_busco_summaries(folder_path)
PlotBuscoSummaries(all_summaries)
carolinafishes/toast documentation built on Dec. 19, 2024, 12:47 a.m.
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View source: R/PlotBuscoSummaries.R
| PlotBuscoSummaries | R Documentation |
plot Busco scores from the compile_busco_summaries output
Description
Graph transcriptome completeness assessment from BUSCO outputs
Usage
result_df <- compile_busco_summaries(folderpath)
PlotBuscoSummaries(result_df)
Arguments
result_df |
The output from the compile busco summaries function or dataframe in identical format |
CSC |
Color choice for "Complete_Single_Copy" = CSC, # Default=Light Blue |
CDC |
Color choice for CDC "Complete_Duplicated" = CDC, # Default=Steel Blue |
Frag |
Color choice for Frag "Fragmented" = Frag, # Default=Medium Purple |
Miss |
Color choice for Miss "Missing" = Miss # Default=Peach Puff |
Value
Returns a plot
Author(s)
Alex Dornburg, dornburgalex@gmail.com
Examples
all_summaries <- compile_busco_summaries(folder_path)
PlotBuscoSummaries(all_summaries)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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