inputFiles: Extracting paths to input files from CAGEr objects

In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Extracting paths to input files from CAGEr objects

Description

Extracts the paths to CAGE data input files from codeCAGEexp objects.

Usage

inputFiles(object)

## S4 method for signature 'CAGEexp'
inputFiles(object)

inputFiles(object) <- value

## S4 replacement method for signature 'CAGEexp'
inputFiles(object) <- value

Arguments

object	A CAGEexp object.
value	A character vector with one file path per sample.

Value

Returns a character vector of paths to CAGE data input files.

Author(s)

Vanja Haberle

Charles Plessy

See Also

Other CAGEr accessor methods: CTSSclusteringMethod(), CTSScoordinatesGR(), CTSScumulativesTagClusters(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), GeneExpSE(), consensusClustersGR(), expressionClasses(), genomeName(), inputFilesType(), librarySizes(), sampleLabels(), seqNameTotalsSE(), tagClustersGR()

Other CAGEr setter methods: genomeName(), inputFilesType(), sampleLabels(), setColors()

Examples

inputFiles(exampleCAGEexp)

charles-plessy/CAGEr documentation built on Nov. 4, 2023, 11:57 a.m.