moleculesGR2CTSS: moleculesGR2CTSS
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
View source: R/ImportMethods.R
moleculesGR2CTSS R Documentation
moleculesGR2CTSS
Description
Calculates CTSS positions from a GenomicRanges object where each element
represents a single molecule.
Usage
moleculesGR2CTSS(gr)
Arguments
gr
A GRanges object.
Value
Returns a GRanges object.
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.CTSS(),
import.bam.ctss(),
import.bam(),
import.bedCTSS(),
import.bedScore(),
import.bedmolecule(),
loadFileIntoGPos()
Examples
gr <- GenomicRanges::GRanges("chr1", IRanges::IRanges(1, 10), c("+", "-", "+"))
CAGEr:::moleculesGR2CTSS(gr)
charles-plessy/CAGEr documentation built on Nov. 4, 2023, 11:57 a.m.
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View source: R/ImportMethods.R
| moleculesGR2CTSS | R Documentation |
moleculesGR2CTSS
Description
Calculates CTSS positions from a GenomicRanges object where each element represents a single molecule.
Usage
moleculesGR2CTSS(gr)
Arguments
gr |
A GRanges object. |
Value
Returns a GRanges object.
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.CTSS(),
import.bam.ctss(),
import.bam(),
import.bedCTSS(),
import.bedScore(),
import.bedmolecule(),
loadFileIntoGPos()
Examples
gr <- GenomicRanges::GRanges("chr1", IRanges::IRanges(1, 10), c("+", "-", "+"))
CAGEr:::moleculesGR2CTSS(gr)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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