plot.hanabi: Plotting Hanabi objects

In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Plotting Hanabi objects

Description

S3 method to plot hanabi objects. Used by the hanabiPlot function.

Usage

## S3 method for class 'hanabi'
plot(
  x,
  alpha = 0.5,
  col = "black",
  xlab = "Total counts",
  ylab = "Unique features",
  main = "Hanabi plot",
  pch = 1,
  ...
)

## S3 method for class 'hanabi'
points(x, ...)

## S3 method for class 'hanabi'
lines(x, ...)

Arguments

x	The hanabi object to plot.
alpha	The alpha transparency of the plot lines.
col	A vector indicating a color per sample (or a vector that can be recycled that way).
xlab	Horizontal axis label.
ylab	Vertical axis label.
main	Plot title.
pch	Plot character at the tip of the lines.
...	Other parameters passed to the generic plot, points or lines functions.

Author(s)

Charles Plessy

See Also

Other CAGEr richness functions: hanabi, hanabiPlot()

charles-plessy/CAGEr documentation built on Oct. 27, 2024, 10:11 p.m.