ranges2names: ranges2names
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
ranges2names R Documentation
ranges2names
Description
Intersection of genomic ranges
Usage
ranges2names(rangesA, rangesB)
Arguments
rangesA
A GenomicRanges::GRanges object.
rangesB
A second GRanges object.
Details
This private (non-exported) function intersects two genomic ranges and
for each element of the first object returns the name of the elements of
the second object that it intersects with.
Value
A Rle factor of same length as the rangesA GRanges
object, indicating one name or a semicolon-separated list of names from
the each rangesB object. The levels are in order of appearance to
to maintain genomic coordinate sort order when the names are cluster names.
Author(s)
Charles Plessy
See Also
Other CAGEr annotation functions:
annotateCTSS(),
plotAnnot(),
ranges2annot(),
ranges2genes()
Examples
names(exampleZv9_annot) <- exampleZv9_annot$gene_name
CAGEr:::ranges2names(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)
charles-plessy/CAGEr documentation built on Oct. 27, 2024, 10:11 p.m.
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| ranges2names | R Documentation |
ranges2names
Description
Intersection of genomic ranges
Usage
ranges2names(rangesA, rangesB)
Arguments
rangesA |
A |
rangesB |
A second |
Details
This private (non-exported) function intersects two genomic ranges and for each element of the first object returns the name of the elements of the second object that it intersects with.
Value
A Rle factor of same length as the rangesA GRanges
object, indicating one name or a semicolon-separated list of names from
the each rangesB object. The levels are in order of appearance to
to maintain genomic coordinate sort order when the names are cluster names.
Author(s)
Charles Plessy
See Also
Other CAGEr annotation functions:
annotateCTSS(),
plotAnnot(),
ranges2annot(),
ranges2genes()
Examples
names(exampleZv9_annot) <- exampleZv9_annot$gene_name
CAGEr:::ranges2names(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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