resetCAGEexp: Reset a CAGEexp object

In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Reset a CAGEexp object

Description

Removes all data but the raw CTSS counts and coordinates from a CAGEexp object. Useful after removing samples.

Usage

resetCAGEexp(object)

## S4 method for signature 'CAGEexp'
resetCAGEexp(object)

Arguments

object

A CAGEexp object

Value

Returns a CAGEexp object, which contains a non-normalised tagCountMatrix experiment.

Author(s)

Charles Plessy

See Also

Other CAGEr object modifiers: CTSStoGenes(), CustomConsensusClusters(), aggregateTagClusters(), annotateCTSS(), clusterCTSS(), cumulativeCTSSdistribution(), getCTSS(), normalizeTagCount(), quantilePositions(), quickEnhancers(), summariseChrExpr()

Examples

resetCAGEexp(exampleCAGEexp)

charles-plessy/CAGEr documentation built on Nov. 4, 2023, 11:57 a.m.