API for chenweng1991/scMitoTracing
R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling
| Global functions | |
|---|---|
| ATAC_Wrapper | Man page Source code |
| AddDatatoplot_clustering | Man page |
| AddDatatoplot_clustering,redeemR-method | Man page |
| AddDist | Man page |
| AddDist,redeemR-method | Man page |
| AddDist_legacy | Man page |
| AddDist_legacy,mitoTracing-method | Man page |
| AddHemSignature | Man page Source code |
| AddTree | Man page |
| AddTree,redeemR-method | Man page |
| Add_AssignVariant | Man page |
| Add_AssignVariant,redeemR-method | Man page |
| Add_DepthMatrix | Man page |
| Add_DepthMatrix,redeemR-method | Man page |
| Add_tree_cut | Man page |
| Add_tree_cut,redeemR-method | Man page |
| AddsigTag.6.new | Man page |
| BinaryDist | Man page |
| CV | Man page Source code |
| CW_mgatk.read | Man page Source code |
| Clone_FinderMarker | Man page |
| ComputeRejectRate | Man page Source code |
| ComputeRejectRate_legacy | Man page Source code |
| CountVperCell | Man page |
| Create_mitoTracing | Man page |
| Create_redeemR | Man page |
| DE.gettripple | Man page |
| Datatoplots | Man page |
| Datatoplots-class | Man page |
| DepthSummary | Man page Source code |
| DistObjects | Man page |
| DistObjects-class | Man page |
| DoDE | Man page |
| FromDist2Graph | Man page |
| Fun.enrich_withFC | Man page |
| Fun.enrich_withFC.pvalue | Man page |
| GEM_Wrapper | Man page Source code |
| GTSummary | Man page Source code |
| Get_Clonal_Variants | Man page |
| Getgenenumber | Man page |
| Getpallet2 | Man page |
| LineageBiasPlot | Man page |
| MakeAllNodes | Man page |
| MakeDF4Regress | Man page |
| MakeNN | Man page |
| Make_AnnTable | Man page |
| Make_Cells4Nodes | Man page |
| Make_matrix | Man page |
| Make_matrix,redeemR-method | Man page |
| Make_tree | Man page |
| Make_tree,redeemR-method | Man page |
| Make_tree_legacy | Man page |
| Make_tree_legacy,mitoTracing-method | Man page |
| MergeMtx | Man page Source code |
| Motifenrich.binom | Man page |
| Multi_Wrapper | Man page Source code |
| MutationProfile.bulk | Man page Source code |
| NN2M | Man page |
| ProgenyMapping | Man page |
| ProgenyMapping_np | Man page |
| Reclustering | Man page |
| Reclustering_hm | Man page |
| Run_Lin_regression | Man page |
| Run_Lin_regression_poi | Man page |
| Runplot_scale_2 | Man page |
| Runplot_scale_3 | Man page |
| SeuratLSIClustering | Man page |
| SeuratLSIClustering,redeemR-method | Man page |
| Show_Consensus | Man page |
| Subset_redeemR | Man page |
| TREE | Man page |
| TREE-class | Man page |
| Tomerge.col | Man page |
| Tomerge_v2 | Man page Source code |
| Translate_RNA2ATAC | Man page Source code |
| Translate_simple_ATAC2RNA | Man page Source code |
| Translate_simple_RNA2ATAC | Man page Source code |
| Vfilter_v3 | Man page Source code |
| Vfilter_v4 | Man page Source code |
| add_derived_profile_info | Man page |
| binomialtest.msig.enrch_deplet | Man page |
| convert_mitotracing_redeemR | Man page |
| df2ProfileMtx | Man page |
| get_ancestral_nodes | Man page |
| gsea_enrichmentheat | Man page |
| mitoTracing | Man page |
| mitoTracing-class | Man page |
| plot_depth | Man page Source code |
| plot_depth_legacy | Man page Source code |
| plot_npSummary | Man page |
| plot_variant | Man page Source code |
| plot_variant_legacy | Man page |
| quick_w_cosine | Man page |
| quick_w_jaccard | Man page |
| reconstruct_genotype_summary | Man page |
| redeemR | Man page |
| redeemR-class | Man page |
| redeemR.read | Man page Source code |
| show,redeemR-method | Man page |
| split_profile | Man page |
| str2vector | Man page |
