Files in compbiomed/BatchQC
Batch Effects Quality Control Software
.DS_Store
.Rbuildignore
.Renviron
.gitattributes
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/.DS_Store
R/.Rapp.history
R/Normalization.R
R/batch_correction.R
R/color_palette.R
R/covariates_not_confounded.R
R/data.R
R/dendrogram.R
R/dendrogram_alpha_numeric_check.R
R/dendrogram_color_palette.R
R/differential_expression.R
R/explained_variation.R
R/global_vars.R
R/heatmap.R
R/heatmap_num_to_char_convertor.R
R/import.R
R/pca.R
R/preprocess.R
R/runApp.R
R/summary_statistics.R
R/volcano_plot.R
README.Rmd
README.md
data/batch_indicator.rda
data/protein_data.rda
data/protein_sample_info.rda
data/signature_data.rda
inst/.DS_Store
inst/CITATION
inst/WORDLIST
inst/shiny/.DS_Store
inst/shiny/.Rhistory
inst/shiny/app.R
inst/shiny/server/.DS_Store
inst/shiny/server/server_01_upload.R
inst/shiny/server/server_02_experimentalDesign.R
inst/shiny/server/server_03_variationAnalysis.R
inst/shiny/server/server_04_heatmap.R
inst/shiny/server/server_05_dendrogram.R
inst/shiny/server/server_06_pca.R
inst/shiny/server/server_07_differentialExpression.R
inst/shiny/ui/.DS_Store
inst/shiny/ui/.Rhistory
inst/shiny/ui/ui_01_upload.R
inst/shiny/ui/ui_02_experimental_design.R
inst/shiny/ui/ui_03_variation.R
inst/shiny/ui/ui_04_median_correlations.R
inst/shiny/ui/ui_05_heatmaps.R
inst/shiny/ui/ui_06_dendrogram.R
inst/shiny/ui/ui_07_pca.R
inst/shiny/ui/ui_08_shape.R
inst/shiny/ui/ui_09_differential_expression_analysis.R
inst/shiny/ui/ui_10_data_download.R
inst/shiny/utils/helpers.R
inst/shiny/www/ajax-loader-bar.gif
inst/shiny/www/bootstrap.min.css
man/.DS_Store
man/BatchQC.Rd
man/DE_analyze.Rd
man/EV_plotter.Rd
man/EV_table.Rd
man/PCA_plotter.Rd
man/batch_correct.Rd
man/batch_design.Rd
man/batch_indicator.Rd
man/batchqc_explained_variation.Rd
man/bladder_data_upload.Rd
man/check_valid_input.Rd
man/color_palette.Rd
man/combat_correction.Rd
man/combat_seq_correction.Rd
man/confound_metrics.Rd
man/cor_props.Rd
man/covariates_not_confounded.Rd
man/cramers_v.Rd
man/dendrogram_alpha_numeric_check.Rd
man/dendrogram_color_palette.Rd
man/dendrogram_plotter.Rd
man/get.res.Rd
man/heatmap_num_to_char_converter.Rd
man/heatmap_plotter.Rd
man/normalize_SE.Rd
man/plot_data.Rd
man/preprocess.Rd
man/process_dendrogram.Rd
man/protein_data.Rd
man/protein_sample_info.Rd
man/pval_plotter.Rd
man/pval_summary.Rd
man/signature_data.Rd
man/std_pearson_corr_coef.Rd
man/summarized_experiment.Rd
man/volcano_plot.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-lintr.R
vignettes/.DS_Store
vignettes/BatchQC_Intro.Rmd
vignettes/BatchQC_examples.Rmd
