pval_summary: Returns summary table for p-values of explained variation
In compbiomed/BatchQC: Batch Effects Quality Control Software

View source: R/differential_expression.R

pval_summary

R Documentation

Returns summary table for p-values of explained variation

Description

Returns summary table for p-values of explained variation

Usage

pval_summary(res_list)

Arguments

res_list

Differential Expression analysis result (a named list of dataframes corresponding to each analysis completed with a "pvalue" column)

Value

summary table for p-values of explained variation for each analysis

Examples

library(scran)
se <- mockSCE()
differential_expression <- BatchQC::DE_analyze(se = se,
                                                method = "DESeq2",
                                                batch = "Treatment",
                                                conditions = c(
                                                "Mutation_Status"),
                                                assay_to_analyze = "counts")
pval_summary(differential_expression)

compbiomed/BatchQC documentation built on Nov. 16, 2024, 5:47 a.m.