confound_metrics: Combine std. Pearson correlation coefficient and Cramer's V
In compbiomed/BatchQC: Batch Effects Quality Control Software

confound_metrics

R Documentation

Combine std. Pearson correlation coefficient and Cramer's V

Combine std. Pearson correlation coefficient and Cramer's V

confound_metrics(se, batch)

`se`	summarized experiment
`batch`	batch variable

metrics of confounding

library(scran)
se <- mockSCE()
confound_table <- BatchQC::confound_metrics(se, batch = "Mutation_Status")
confound_table

compbiomed/BatchQC documentation built on Nov. 16, 2024, 5:47 a.m.

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