dendrogram_plotter: Dendrogram Plot
In compbiomed/BatchQC: Batch Effects Quality Control Software

dendrogram_plotter

R Documentation

Dendrogram Plot

Description

This function creates a dendrogram plot

Usage

dendrogram_plotter(se, assay, batch_var, category_var)

Arguments

`se`	SummarizedExperiment object
`assay`	assay to plot
`batch_var`	sample metadata column representing batch
`category_var`	sample metadata column representing category of interest

Value

named list of dendrogram plots

dendrogram is a dendrogram ggplot

circular_dendrogram is a circular dendrogram ggplot

Examples

library(scran)
se <- mockSCE()
dendrogram_plot <- BatchQC::dendrogram_plotter(se,
                                            "counts",
                                            "Mutation_Status",
                                            "Treatment")
dendrogram_plot$dendrogram
dendrogram_plot$circular_dendrogram

compbiomed/BatchQC documentation built on Nov. 16, 2024, 5:47 a.m.