covariates_not_confounded: Returns list of covariates not confounded by batch; helper...
In compbiomed/BatchQC: Batch Effects Quality Control Software
View source: R/covariates_not_confounded.R
covariates_not_confounded R Documentation
Returns list of covariates not confounded by batch; helper function for
explained variation and for populating shiny app condition options
Description
Returns list of covariates not confounded by batch; helper function for
explained variation and for populating shiny app condition options
Usage
covariates_not_confounded(se, batch)
Arguments
se
Summarized experiment object
batch
Batch variable
Value
List of explained variation by batch and condition
Examples
library(scran)
se <- mockSCE()
covariates_not_confounded <- BatchQC::covariates_not_confounded(se,
batch = "Mutation_Status")
covariates_not_confounded
compbiomed/BatchQC documentation built on May 3, 2024, 9:31 a.m.
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View source: R/covariates_not_confounded.R
| covariates_not_confounded | R Documentation |
Returns list of covariates not confounded by batch; helper function for explained variation and for populating shiny app condition options
Description
Returns list of covariates not confounded by batch; helper function for explained variation and for populating shiny app condition options
Usage
covariates_not_confounded(se, batch)
Arguments
se |
Summarized experiment object |
batch |
Batch variable |
Value
List of explained variation by batch and condition
Examples
library(scran)
se <- mockSCE()
covariates_not_confounded <- BatchQC::covariates_not_confounded(se,
batch = "Mutation_Status")
covariates_not_confounded
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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