limma_correction: Limma Correction This function applies limma batch correction...
In compbiomed/BatchQC: Batch Effects Quality Control Software
View source: R/batch_correction.R
limma_correction R Documentation
Limma Correction
This function applies limma batch correction to your provided assay
Description
Limma Correction
This function applies limma batch correction to your provided assay
Usage
limma_correction(se, assay_to_normalize, batch, covar, output_assay_name)
Arguments
se
SummarizedExperiment object
assay_to_normalize
Log assay that should be corrected
batch
Factor containing batch information
covar
list of covariates
output_assay_name
name of results assay
Value
SE object with an added limma corrected array
compbiomed/BatchQC documentation built on Feb. 24, 2025, 10:52 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/batch_correction.R
| limma_correction | R Documentation |
Limma Correction This function applies limma batch correction to your provided assay
Description
Limma Correction This function applies limma batch correction to your provided assay
Usage
limma_correction(se, assay_to_normalize, batch, covar, output_assay_name)
Arguments
se |
SummarizedExperiment object |
assay_to_normalize |
Log assay that should be corrected |
batch |
Factor containing batch information |
covar |
list of covariates |
output_assay_name |
name of results assay |
Value
SE object with an added limma corrected array
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.