pval_plotter: P-value Plotter This function allows you to plot p-values of...
In compbiomed/BatchQC: Batch Effects Quality Control Software

View source: R/differential_expression.R

pval_plotter

R Documentation

P-value Plotter This function allows you to plot p-values of explained variation

Description

P-value Plotter This function allows you to plot p-values of explained variation

Usage

pval_plotter(DE_results)

Arguments

DE_results

Differential Expression analysis result (a named list of dataframes corresponding to each analysis completed with a "pvalue" column)

Value

boxplots of pvalues for each condition

Examples

library(scran)
se <- mockSCE()
differential_expression <- BatchQC::DE_analyze(se = se,
                                                method = "DESeq2",
                                                batch = "Treatment",
                                                conditions = c(
                                                "Mutation_Status"),
                                                assay_to_analyze = "counts")
pval_summary(differential_expression)
pval_plotter(differential_expression)

compbiomed/BatchQC documentation built on Nov. 16, 2024, 5:47 a.m.