combat_seq_correction: ComBat-Seq Correction This function applies ComBat-seq...

In compbiomed/BatchQC: Batch Effects Quality Control Software

ComBat-Seq Correction This function applies ComBat-seq correction to your summarized experiment object

Description

ComBat-Seq Correction This function applies ComBat-seq correction to your summarized experiment object

Usage

ComBat_seq_correction(se, assay_to_normalize, batch, group, covar,
output_assay_name)

Arguments

se	SummarizedExperiment object
assay_to_normalize	Assay that should be corrected
batch	The variable that represents batch
group	The group variable
covar	list of covariates
output_assay_name	name of results assay

Value

SE object with an added ComBat-seq corrected array

compbiomed/BatchQC documentation built on Feb. 24, 2025, 10:52 a.m.