combat_seq_correction: Combat-Seq Correction This function applies combat-seq...

In compbiomed/BatchQC: Batch Effects Quality Control Software

Combat-Seq Correction This function applies combat-seq correction to your summarized experiment object

Description

Combat-Seq Correction This function applies combat-seq correction to your summarized experiment object

Usage

combat_seq_correction(se, assay_to_normalize, batch, group, covar,
output_assay_name)

Arguments

se	SummarizedExperiment object
assay_to_normalize	Assay that should be corrected
batch	The variable that represents batch
group	The group variable
covar	Covariate Matrix
output_assay_name	name of results assay

Value

SE object with an added combat-seq corrected array

compbiomed/BatchQC documentation built on Nov. 16, 2024, 5:47 a.m.