combat_correction: Combat Correction This function applies combat correction to...
In compbiomed/BatchQC: Batch Effects Quality Control Software
View source: R/batch_correction.R
combat_correction R Documentation
Combat Correction
This function applies combat correction to your summarized experiment object
Description
Combat Correction
This function applies combat correction to your summarized experiment object
Usage
combat_correction(se, assay_to_normalize, batch, covar, output_assay_name)
Arguments
se
SummarizedExperiment object
assay_to_normalize
Assay that should be corrected
batch
The variable that represents batch
covar
Covariate Matrix
output_assay_name
name of results assay
Value
SE object with an added combat corrected array
compbiomed/BatchQC documentation built on April 23, 2024, 7:38 a.m.
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View source: R/batch_correction.R
| combat_correction | R Documentation |
Combat Correction This function applies combat correction to your summarized experiment object
Description
Combat Correction This function applies combat correction to your summarized experiment object
Usage
combat_correction(se, assay_to_normalize, batch, covar, output_assay_name)
Arguments
se |
SummarizedExperiment object |
assay_to_normalize |
Assay that should be corrected |
batch |
The variable that represents batch |
covar |
Covariate Matrix |
output_assay_name |
name of results assay |
Value
SE object with an added combat corrected array
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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