EV_plotter: This function allows you to plot explained variation

In compbiomed/BatchQC: Batch Effects Quality Control Software

This function allows you to plot explained variation

Description

This function allows you to plot explained variation

Usage

EV_plotter(batchqc_ev)

Arguments

batchqc_ev

table of explained variation from batchqc_explained_variation

Value

boxplot of explained variation

Examples

library(scran)
se <- mockSCE()
se$Mutation_Status <- as.factor(se$Mutation_Status)
se$Treatment <- as.factor(se$Treatment)
expl_var_result <- batchqc_explained_variation(se, batch = "Mutation_Status",
                            condition = "Treatment", assay_name = "counts")
EV_boxplot <- BatchQC::EV_plotter(expl_var_result[[1]])
EV_boxplot

compbiomed/BatchQC documentation built on May 3, 2024, 9:31 a.m.