sva_correction: sva Correction This function applies sva correction to a...

In compbiomed/BatchQC: Batch Effects Quality Control Software

sva Correction This function applies sva correction to a summarized experiment object (implementation adapted from sva::psva)

Description

sva Correction This function applies sva correction to a summarized experiment object (implementation adapted from sva::psva)

Usage

sva_correction(
  se,
  assay_to_normalize,
  var_of_interest,
  covar,
  output_assay_name
)

Arguments

se	SummarizedExperiment object
assay_to_normalize	string; name of assay that should be corrected
var_of_interest	string; name of experimental variable of interest
covar	list; sting list of covariates to include in sva analysis
output_assay_name	string; name of results assay

Value

SE object with an added sva corrected array

compbiomed/BatchQC documentation built on June 10, 2025, 8:32 p.m.