nb_histogram: This function creates a histogram from the negative binomial...
In compbiomed/BatchQC: Batch Effects Quality Control Software
View source: R/negative_binomial_check.R
nb_histogram R Documentation
This function creates a histogram from the negative binomial goodness-of-fit
pvalues.
Description
This function creates a histogram from the negative binomial goodness-of-fit
pvalues.
Usage
nb_histogram(p_val_table)
Arguments
p_val_table
table of p-values from the nb test
Value
a histogram of the number of genes within a p-value range
Examples
# example code
library(scran)
se <- mockSCE(ncells = 20)
nb_results <- goodness_of_fit_DESeq2(se = se, count_matrix = "counts",
condition = "Treatment", batch = "Mutation_Status")
nb_histogram(nb_results)
compbiomed/BatchQC documentation built on Aug. 1, 2024, 8:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/negative_binomial_check.R
| nb_histogram | R Documentation |
This function creates a histogram from the negative binomial goodness-of-fit pvalues.
Description
This function creates a histogram from the negative binomial goodness-of-fit pvalues.
Usage
nb_histogram(p_val_table)
Arguments
p_val_table |
table of p-values from the nb test |
Value
a histogram of the number of genes within a p-value range
Examples
# example code
library(scran)
se <- mockSCE(ncells = 20)
nb_results <- goodness_of_fit_DESeq2(se = se, count_matrix = "counts",
condition = "Treatment", batch = "Mutation_Status")
nb_histogram(nb_results)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.