nb_proportion | R Documentation |
This function determines the proportion of p-values below a specific value and compares to the previously determined threshold of 0.42 for extreme low values.
nb_proportion(p_val_table, low_pval = 0.01, threshold = 0.42)
p_val_table |
table of p-values from the nb test |
low_pval |
value of the p-value cut off to use in proportion |
threshold |
the value to compare the p-values to |
a statement about whether DESeq2 is appropriate to use for analysis
# example code
library(scran)
se <- mockSCE(ncells = 20)
nb_results <- goodness_of_fit_DESeq2(se = se, count_matrix = "counts",
condition = "Treatment", batch = "Mutation_Status")
nb_proportion(nb_results, low_pval = 0.01, threshold = 0.42)
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