dendrogram_color_palette: Dendrogram color palette

In compbiomed/BatchQC: Batch Effects Quality Control Software

Dendrogram color palette

Description

This function creates the color palette used in the dendrogram plotter

Usage

dendrogram_color_palette(col, dendrogram_info)

Arguments

col	string object representing color of the label
dendrogram_info	dendrogram_ends object

Value

annotation_color vector of colors corresponding to col variable

Examples

library(scran)
se <- mockSCE()
process_dendro <- BatchQC::process_dendrogram(se, "counts")
dendrogram_ends <- process_dendro$dendrogram_ends
col <- process_dendro$condition_var
dendro_colors <- dendrogram_color_palette(col = "Treatment",
                                    dendrogram_info = dendrogram_ends)
dendro_colors

compbiomed/BatchQC documentation built on April 28, 2024, 6:33 a.m.