batchqc_explained_variation: Returns a list of explained variation by batch and condition...

In compbiomed/BatchQC: Batch Effects Quality Control Software

Returns a list of explained variation by batch and condition combinations

Description

Returns a list of explained variation by batch and condition combinations

Usage

batchqc_explained_variation(se, batch, condition = NULL, assay_name)

Arguments

se	Summarized experiment object
batch	Batch covariate
condition	Condition covariate(s) of interest if desired, default is NULL
assay_name	Assay of choice

Value

List of explained variation by batch and condition

Examples

library(scran)
se <- mockSCE()
batchqc_explained_variation <- BatchQC::batchqc_explained_variation(se,
                                        batch = "Mutation_Status",
                                        condition = "Treatment",
                                        assay_name = "counts")
batchqc_explained_variation

compbiomed/BatchQC documentation built on April 18, 2024, 1:13 a.m.