utils/saarclust_output_accuracy_plot.snakemake.R
In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.
log <- file(snakemake@log[[1]], open='wt')
sink(file=log, type='message')
sink(file=log, type='output')
source("postProcessing.R")
clusters <- snakemake@input[["clusters"]]
raw_data <- snakemake@input[["raw_data"]]
v <- ClustersAccuracyPerChrPerDir(Clusters2process=clusters, Quals2process=raw_data)
write.table(v, file = snakemake@output[[1]], quote = F, sep = "\t", row.names = F)
daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.
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log <- file(snakemake@log[[1]], open='wt')
sink(file=log, type='message')
sink(file=log, type='output')
source("postProcessing.R")
clusters <- snakemake@input[["clusters"]]
raw_data <- snakemake@input[["raw_data"]]
v <- ClustersAccuracyPerChrPerDir(Clusters2process=clusters, Quals2process=raw_data)
write.table(v, file = snakemake@output[[1]], quote = F, sep = "\t", row.names = F)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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