Description Usage Arguments Author(s)
Simple posterior inference for beta-binomial when ncounts and ssize are only length 1.
1 2 | bb_simple_post(ncounts, ssize, ploidy, p1geno, p2geno, seq_error = 0,
bias_val = 1, od_param = 0)
|
ncounts |
A vector of non-negative integers. The ith element is the number of counts of the ith sample. |
ssize |
A vector of positive integers. The ith element is the total number of counts of the ith sample. |
ploidy |
The ploidy of the species. |
p1geno |
The first parental genotype. |
p2geno |
The second parental genotype. |
seq_error |
A non-negative numeric. This is the known sequencing error rate. This is a rough high-ball error rate given by Li et. al. (2011). |
bias_val |
The bias parameter. A value of 1 means no bias. |
od_param |
The over-dispersion parameter. A value of 0 means no overdispersion. A value of 1 means total overdispersion. |
David Gerard
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