dbeta_dl: Derivative of beta density w.r.t. unconstrained...

Description Usage Arguments Author(s)

View source: R/RcppExports.R

Description

I use the chain rule here. dbeta_dprop * dxi_df * df_deps * deps_dell.

Usage

1
dbeta_dl(x, n, d, ell, p, h)

Arguments

x

The number of counts of reference allele.

n

The number of counts of reads.

d

The sequencing bias parameter.

ell

Expit of eps. We have eps = exp(ell) / (1 + exp(ell)), or ell = log(eps / (1 - eps))

p

The proportion of genome that is the reference allele.

h

the overdisperion parameter. tau = 1 / (h + 1) or h = (1 - tau) / tau

Author(s)

David Gerard


dcgerard/updogAlpha documentation built on May 14, 2019, 3:10 a.m.