Description Usage Arguments Author(s)
I use the chain rule here. dbeta_dprop
* dxi_df
*
df_deps
* deps_dell
.
1 | dbeta_dl(x, n, d, ell, p, h)
|
x |
The number of counts of reference allele. |
n |
The number of counts of reads. |
d |
The sequencing bias parameter. |
ell |
Expit of eps. We have eps = exp(ell) / (1 + exp(ell)), or ell = log(eps / (1 - eps)) |
p |
The proportion of genome that is the reference allele. |
h |
the overdisperion parameter. tau = 1 / (h + 1) or h = (1 - tau) / tau |
David Gerard
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